STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM84414.1VanZ like protein; COG4767 Glycopeptide antibiotics resistance protein. (363 aa)    
Predicted Functional Partners:
EDM84416.1
COG2945 Predicted hydrolase of the alpha/beta superfamily.
 
     0.736
EDM82422.1
Hypothetical protein.
  
     0.693
EDM84415.1
COG3411 Ferredoxin.
       0.683
EDM83057.1
Hypothetical protein.
  
     0.681
EDM82628.1
Adenosylcobinamide-phosphate synthase; COG1270 Cobalamin biosynthesis protein CobD/CbiB.
  
     0.622
coaX
Putative transcription regulation accessory factor transcription regulator protein; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.582
EDM84413.1
Biotin--protein ligase; COG0340 Biotin-(acetyl-CoA carboxylase) ligase.
       0.579
EDM84417.1
Serine-type D-Ala-D-Ala carboxypeptidase; COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
       0.578
EDM83025.1
Putative transmembrane protein; COG4942 Membrane-bound metallopeptidase.
  
     0.552
EDM84411.1
Hypothetical protein.
       0.545
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.