STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM84483.1Predicted peptidase, outer membrane lipoprotein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins). (172 aa)    
Predicted Functional Partners:
EDM84484.1
COG3671 Predicted membrane protein.
  
    0.789
EDM84485.1
COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol.
       0.518
fliL
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
   
   0.484
EDM84494.1
OmpA/MotB; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
   0.474
EDM84486.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
    
 0.467
EDM84481.1
PemK-like protein; COG2337 Growth inhibitor.
       0.442
EDM84482.1
Hypothetical protein; COG2336 Growth regulator.
       0.442
EDM82812.1
COG0739 Membrane proteins related to metalloendopeptidases.
  
  
 0.434
EDM82986.1
COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
  
  
 0.427
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.