STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM84546.1Hypothetical protein; COG3687 Predicted metal-dependent hydrolase. (320 aa)    
Predicted Functional Partners:
EDM83074.1
Putative short-chain dehydrogenase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
     0.789
EDM84545.1
COG0427 Acetyl-CoA hydrolase.
       0.741
EDM83578.1
Hypothetical protein; COG0559 Branched-chain amino acid ABC-type transport system, permease components.
  
     0.735
EDM84678.1
Hypothetical protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold.
  
     0.710
EDM84433.1
Transcriptional regulator, MerR-family protein; COG0789 Predicted transcriptional regulators.
 
     0.679
EDM82518.1
COG1309 Transcriptional regulator.
  
     0.665
EDM84798.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.659
EDM84744.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.619
EDM82808.1
Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator.
  
     0.608
EDM82506.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.605
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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