Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDM82203.1 | EDM84624.1 | LMED105_14355 | LMED105_03727 | COG3011 Uncharacterized protein conserved in bacteria; Belongs to the COQ7 family. | ABC-1; COG0661 Predicted unusual protein kinase. | 0.442 |
EDM82203.1 | ubiG | LMED105_14355 | LMED105_15414 | COG3011 Uncharacterized protein conserved in bacteria; Belongs to the COQ7 family. | Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.755 |
EDM84623.1 | EDM84624.1 | LMED105_03722 | LMED105_03727 | Hypothetical protein. | ABC-1; COG0661 Predicted unusual protein kinase. | 0.512 |
EDM84624.1 | EDM82203.1 | LMED105_03727 | LMED105_14355 | ABC-1; COG0661 Predicted unusual protein kinase. | COG3011 Uncharacterized protein conserved in bacteria; Belongs to the COQ7 family. | 0.442 |
EDM84624.1 | EDM84623.1 | LMED105_03727 | LMED105_03722 | ABC-1; COG0661 Predicted unusual protein kinase. | Hypothetical protein. | 0.512 |
EDM84624.1 | ubiG | LMED105_03727 | LMED105_15414 | ABC-1; COG0661 Predicted unusual protein kinase. | Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.407 |
ubiG | EDM82203.1 | LMED105_15414 | LMED105_14355 | Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | COG3011 Uncharacterized protein conserved in bacteria; Belongs to the COQ7 family. | 0.755 |
ubiG | EDM84624.1 | LMED105_15414 | LMED105_03727 | Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | ABC-1; COG0661 Predicted unusual protein kinase. | 0.407 |