STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM84635.1Radical SAM; COG1032 Fe-S oxidoreductase. (624 aa)    
Predicted Functional Partners:
EDM83248.1
Transcriptional regulator, Fis family protein; COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.
  
 
 0.994
EDM83480.1
Hypothetical protein.
   
    0.750
EDM84634.1
2-hydroxychromene-2-carboxylate isomerase, putative; COG3917 2-hydroxychromene-2-carboxylate isomerase.
       0.668
EDM84633.1
COG1230 Co/Zn/Cd efflux system component.
       0.579
EDM82232.1
UbiA prenyltransferase; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; Belongs to the UbiA prenyltransferase family.
   
 
 0.530
EDM82807.1
Hypothetical protein; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; Belongs to the UbiA prenyltransferase family.
   
 
 0.530
EDM84636.1
Hypothetical protein.
       0.523
EDM84743.1
Nucleoside-diphosphate-sugar epimerase-like protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
  
  
  0.504
EDM84637.1
Hypothetical protein; COG3450 Predicted enzyme of the cupin superfamily.
 
     0.472
EDM82213.1
Hypothetical protein.
  
     0.449
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.