STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM84791.1Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins. (341 aa)    
Predicted Functional Partners:
EDM84792.1
COG1012 NAD-dependent aldehyde dehydrogenases.
 
     0.807
EDM84793.1
Oxidoreductase, GMC family protein; COG2303 Choline dehydrogenase and related flavoproteins; Belongs to the GMC oxidoreductase family.
       0.686
EDM82953.1
Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase.
     
 0.681
EDM83762.1
COG0067 Glutamate synthase domain 1.
    
  0.667
EDM84794.1
Fatty acid desaturase; COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
 
     0.644
EDM83139.1
Hypothetical protein; COG3687 Predicted metal-dependent hydrolase.
  
     0.561
EDM84546.1
Hypothetical protein; COG3687 Predicted metal-dependent hydrolase.
  
     0.540
EDM82681.1
Hypothetical protein; COG3687 Predicted metal-dependent hydrolase.
  
     0.520
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.461
EDM84449.1
COG3687 Predicted metal-dependent hydrolase.
  
     0.446
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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