STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM84807.1Hypothetical protein. (133 aa)    
Predicted Functional Partners:
EDM82852.1
Glyoxalase/bleomycin resistance protein/dioxygenase; COG2764 Uncharacterized protein conserved in bacteria.
 
 
 0.817
EDM84808.1
COG4335 DNA alkylation repair enzyme.
       0.779
EDM83249.1
Glyoxalase/bleomycin resistance protein/dioxygenase; COG0346 Lactoylglutathione lyase and related lyases.
    
 0.707
EDM82252.1
Chorismate mutase/prephenate dehydratase; COG1605 Chorismate mutase.
    
  0.670
EDM84809.1
COG3326 Predicted membrane protein.
       0.651
EDM84810.1
Aminoglycoside adenylyltransferase.
       0.651
EDM84811.1
Activator of Hsp90 ATPase family protein.
 
     0.636
thiC
Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.
   
 
  0.603
EDM85158.1
COG0729 Outer membrane protein.
   
    0.414
EDM84812.1
Hypothetical protein.
       0.407
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.