STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM84838.1Alpha subunit of malonate decarboxylase; COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase. (554 aa)    
Predicted Functional Partners:
EDM84840.1
COG0777 Acetyl-CoA carboxylase beta subunit.
 
 0.999
EDM84841.1
Malonate decarboxylase gamma subunit; COG0825 Acetyl-CoA carboxylase alpha subunit.
 
  
  0.996
EDM84839.1
Malonate decarboxylase subunit delta.
 
  
 0.976
EDM84843.1
COG1767 Triphosphoribosyl-dephospho-CoA synthetase.
  
 0.973
accD
acetyl-CoA carboxylase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
 0.947
EDM84844.1
COG0331 (acyl-carrier-protein) S-malonyltransferase.
 
    0.868
EDM84837.1
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
    
  0.852
EDM85166.1
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
    
 0.829
EDM83796.1
Two domain protein: 3-hydroxyacyl-CoA dehydrogenase; COG1250 3-hydroxyacyl-CoA dehydrogenase.
    
 0.829
EDM84836.1
Tripartite ATP-independent periplasmic transporter, DctQ component; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
       0.746
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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