STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM84855.14Fe-4S ferredoxin, iron-sulfur binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (80 aa)    
Predicted Functional Partners:
EDM84852.1
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
 0.947
sdhA
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 0.911
EDM84691.1
NADH dehydrogenase (quinone); COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
    
 0.826
EDM84009.1
Putative iron-sulfur binding protein; COG1145 Ferredoxin.
    
 0.794
EDM84853.1
COG1146 Ferredoxin.
  
 
 0.730
cysC
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Catalyzes the synthesis of activated sulfate.
    
 0.725
cysN
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
    
 0.725
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
  0.722
EDM83479.1
COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
  
 0.720
EDM83762.1
COG0067 Glutamate synthase domain 1.
     
 0.673
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.