STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM84982.1Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins. (354 aa)    
Predicted Functional Partners:
EDM84787.1
COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.774
EDM84983.1
Hypothetical protein; COG1115 Na+/alanine symporter.
       0.773
EDM82953.1
Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase.
     
 0.681
EDM84984.1
COG3657 Uncharacterized protein conserved in bacteria.
       0.668
EDM83762.1
COG0067 Glutamate synthase domain 1.
    
  0.667
EDM83139.1
Hypothetical protein; COG3687 Predicted metal-dependent hydrolase.
  
     0.595
EDM82681.1
Hypothetical protein; COG3687 Predicted metal-dependent hydrolase.
  
     0.577
EDM84546.1
Hypothetical protein; COG3687 Predicted metal-dependent hydrolase.
  
     0.561
EDM84449.1
COG3687 Predicted metal-dependent hydrolase.
  
     0.545
EDM83217.1
Hypothetical protein; COG3687 Predicted metal-dependent hydrolase.
  
     0.493
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.