STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM85013.1COG0463 Glycosyltransferases involved in cell wall biogenesis. (300 aa)    
Predicted Functional Partners:
EDM85010.1
Hypothetical protein.
 
   
 0.843
EDM84742.1
Chemotaxis two-component response regulator protein; COG0784 FOG: CheY-like receiver.
  
 
 0.836
EDM85016.1
Hypothetical protein.
 
     0.831
EDM85012.1
Lipopolysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
    
 0.828
EDM85015.1
Hypothetical protein; COG2152 Predicted glycosylase.
 
     0.818
EDM85011.1
DegT/DnrJ/EryC1/StrS aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
   
 0.792
EDM83854.1
GGDEF; COG2199 FOG: GGDEF domain.
  
 
 0.792
EDM85009.1
Epimerase/dehydratase, putative; COG1086 Predicted nucleoside-diphosphate sugar epimerases.
    
 0.790
EDM85024.1
Glycosyl transferase, family 2; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.787
EDM85014.1
Hypothetical protein; COG0110 Acetyltransferase (isoleucine patch superfamily).
       0.773
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.