STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM85112.1Hypothetical protein; COG1459 Type II secretory pathway, component PulF. (345 aa)    
Predicted Functional Partners:
EDM85113.1
Type II secretion system protein E:General secretory system II, protein E, N-terminal; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 0.919
EDM85108.1
Hypothetical protein.
  
  
 0.865
EDM85107.1
Hypothetical protein.
  
  
 0.862
EDM85114.1
COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.
  
  
 0.791
EDM85109.1
Hypothetical protein; COG2225 Malate synthase.
       0.773
EDM85110.1
Hypothetical protein.
       0.773
EDM85111.1
Hypothetical protein; COG0210 Superfamily I DNA and RNA helicases.
       0.773
EDM83311.1
Type II secretion system protein E:General secretory system II, protein E, N-terminal; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 0.693
EDM81962.1
Conserved protein with nucleoside triphosphate hydrolase domain; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 0.679
EDM82703.1
DNA internalization-related competence protein ComEC/Rec2; COG0658 Predicted membrane metal-binding protein.
   
  
 0.675
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
Server load: low (24%) [HD]