EDM85176.1 protein (Limnobacter sp. MED105) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EDM85176.1

Type II and III secretion system protein; COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family. (531 aa)

Predicted Functional Partners:

EDM84938.1

0.897

EDM85177.1

0.773

EDM85114.1

0.763

EDM85179.1

0.754

EDM85178.1

0.739

EDM85180.1

0.737

EDM85181.1

0.737

EDM85182.1

0.737

EDM84585.1

0.614

EDM85107.1

0.594

Your Current Organism:

Limnobacter sp. MED105

NCBI taxonomy Id: 391597
Other names: L. sp. MED105

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDM84585.1	EDM85114.1	LMED105_03520	LMED105_06177	Yop virulence translocation protein R; COG4790 Type III secretory pathway, component EscR.	COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	0.614
EDM84585.1	EDM85176.1	LMED105_03520	LMED105_06487	Yop virulence translocation protein R; COG4790 Type III secretory pathway, component EscR.	Type II and III secretion system protein; COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	0.614
EDM84938.1	EDM85114.1	LMED105_05297	LMED105_06177	Hypothetical protein.	COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	0.897
EDM84938.1	EDM85176.1	LMED105_05297	LMED105_06487	Hypothetical protein.	Type II and III secretion system protein; COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	0.897
EDM85107.1	EDM85114.1	LMED105_06142	LMED105_06177	Hypothetical protein.	COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	0.947
EDM85107.1	EDM85176.1	LMED105_06142	LMED105_06487	Hypothetical protein.	Type II and III secretion system protein; COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	0.594
EDM85107.1	EDM85178.1	LMED105_06142	LMED105_06497	Hypothetical protein.	COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.	0.542
EDM85107.1	EDM85179.1	LMED105_06142	LMED105_06502	Hypothetical protein.	Type II secretion system protein; COG1459 Type II secretory pathway, component PulF.	0.417
EDM85114.1	EDM84585.1	LMED105_06177	LMED105_03520	COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	Yop virulence translocation protein R; COG4790 Type III secretory pathway, component EscR.	0.614
EDM85114.1	EDM84938.1	LMED105_06177	LMED105_05297	COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	Hypothetical protein.	0.897
EDM85114.1	EDM85107.1	LMED105_06177	LMED105_06142	COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	Hypothetical protein.	0.947
EDM85114.1	EDM85176.1	LMED105_06177	LMED105_06487	COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	Type II and III secretion system protein; COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	0.763
EDM85176.1	EDM84585.1	LMED105_06487	LMED105_03520	Type II and III secretion system protein; COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	Yop virulence translocation protein R; COG4790 Type III secretory pathway, component EscR.	0.614
EDM85176.1	EDM84938.1	LMED105_06487	LMED105_05297	Type II and III secretion system protein; COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	Hypothetical protein.	0.897
EDM85176.1	EDM85107.1	LMED105_06487	LMED105_06142	Type II and III secretion system protein; COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	Hypothetical protein.	0.594
EDM85176.1	EDM85114.1	LMED105_06487	LMED105_06177	Type II and III secretion system protein; COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	0.763
EDM85176.1	EDM85177.1	LMED105_06487	LMED105_06492	Type II and III secretion system protein; COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	Hypothetical protein.	0.773
EDM85176.1	EDM85178.1	LMED105_06487	LMED105_06497	Type II and III secretion system protein; COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.	0.739
EDM85176.1	EDM85179.1	LMED105_06487	LMED105_06502	Type II and III secretion system protein; COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	Type II secretion system protein; COG1459 Type II secretory pathway, component PulF.	0.754
EDM85176.1	EDM85180.1	LMED105_06487	LMED105_06507	Type II and III secretion system protein; COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.	Hypothetical protein; COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ).	0.737