STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM82562.1COG3239 Fatty acid desaturase. (363 aa)    
Predicted Functional Partners:
EDM82561.1
Oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
 0.973
EDM82529.1
Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
  0.930
EDM84768.1
PGAP1-like protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.709
EDM82808.1
Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator.
 
  
 0.701
EDM85155.1
Oxidoreductase; COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
 
 
 0.671
EDM82398.1
COG1398 Fatty-acid desaturase.
    
 0.631
EDM84445.1
Acyltransferase; COG0840 Methyl-accepting chemotaxis protein.
  
     0.627
EDM83665.1
Probable transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator.
  
     0.621
EDM82783.1
Acyltransferase; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
     0.611
EDM84260.1
COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
  
 
 0.598
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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