STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM83753.1Hypothetical protein. (322 aa)    
Predicted Functional Partners:
EDM83754.1
COG3166 Tfp pilus assembly protein PilN.
       0.773
EDM83755.1
COG3167 Tfp pilus assembly protein PilO.
       0.773
EDM83756.1
Hypothetical protein.
       0.773
EDM83757.1
Pili assembly protein PilQ; COG0860 N-acetylmuramoyl-L-alanine amidase.
       0.664
EDM83752.1
Penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein; COG5009 Membrane carboxypeptidase/penicillin-binding protein.
       0.506
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.500
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
       0.500
EDM83760.1
COG0232 dGTP triphosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily.
       0.500
EDM83761.1
Conserved transposase-like protein; COG1943 Transposase and inactivated derivatives.
       0.485
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.