STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM83786.1Hypothetical protein. (70 aa)    
Predicted Functional Partners:
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.877
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.863
EDM83060.1
COG1643 HrpA-like helicases.
    
 0.855
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.847
EDM83787.1
Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.768
EDM83857.1
Helicase; COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
   
 0.749
EDM82835.1
COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
   
 0.749
EDM83788.1
Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator.
       0.726
EDM82826.1
COG0281 Malic enzyme.
     
 0.706
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
    
  0.652
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.