STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM82956.1Hypothetical protein. (187 aa)    
Predicted Functional Partners:
EDM82955.1
Oxidoreductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      0.833
EDM84433.1
Transcriptional regulator, MerR-family protein; COG0789 Predicted transcriptional regulators.
 
      0.641
EDM82954.1
COG1309 Transcriptional regulator.
       0.530
EDM84260.1
COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
    
 
 0.517
EDM85155.1
Oxidoreductase; COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
    
 
 0.517
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.418
EDM82016.1
Iron-sulfur cluster binding protein; COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain.
    
   0.410
EDM82953.1
Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase.
  
    0.409
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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