Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDM82002.1 | EDM82003.1 | LMED105_10870 | LMED105_10875 | Hypothetical protein. | Hypothetical protein. | 0.773 |
EDM82002.1 | EDM82004.1 | LMED105_10870 | LMED105_10880 | Hypothetical protein. | Hypothetical protein; COG0824 Predicted thioesterase. | 0.522 |
EDM82002.1 | EDM82005.1 | LMED105_10870 | LMED105_10885 | Hypothetical protein. | COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). | 0.522 |
EDM82002.1 | EDM82676.1 | LMED105_10870 | LMED105_11430 | Hypothetical protein. | Ham1-like protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.426 |
EDM82002.1 | EDM83762.1 | LMED105_10870 | LMED105_08035 | Hypothetical protein. | COG0067 Glutamate synthase domain 1. | 0.455 |
EDM82002.1 | guaA | LMED105_10870 | LMED105_14213 | Hypothetical protein. | Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP. | 0.805 |
EDM82002.1 | guaB | LMED105_10870 | LMED105_14223 | Hypothetical protein. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.418 |
EDM82002.1 | purA | LMED105_10870 | LMED105_01948 | Hypothetical protein. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.452 |
EDM82002.1 | purH | LMED105_10870 | LMED105_15993 | Hypothetical protein. | Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful). | 0.432 |
EDM82003.1 | EDM82002.1 | LMED105_10875 | LMED105_10870 | Hypothetical protein. | Hypothetical protein. | 0.773 |
EDM82003.1 | EDM82004.1 | LMED105_10875 | LMED105_10880 | Hypothetical protein. | Hypothetical protein; COG0824 Predicted thioesterase. | 0.522 |
EDM82003.1 | EDM82005.1 | LMED105_10875 | LMED105_10885 | Hypothetical protein. | COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). | 0.522 |
EDM82004.1 | EDM82002.1 | LMED105_10880 | LMED105_10870 | Hypothetical protein; COG0824 Predicted thioesterase. | Hypothetical protein. | 0.522 |
EDM82004.1 | EDM82003.1 | LMED105_10880 | LMED105_10875 | Hypothetical protein; COG0824 Predicted thioesterase. | Hypothetical protein. | 0.522 |
EDM82004.1 | EDM82005.1 | LMED105_10880 | LMED105_10885 | Hypothetical protein; COG0824 Predicted thioesterase. | COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). | 0.851 |
EDM82005.1 | EDM82002.1 | LMED105_10885 | LMED105_10870 | COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). | Hypothetical protein. | 0.522 |
EDM82005.1 | EDM82003.1 | LMED105_10885 | LMED105_10875 | COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). | Hypothetical protein. | 0.522 |
EDM82005.1 | EDM82004.1 | LMED105_10885 | LMED105_10880 | COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). | Hypothetical protein; COG0824 Predicted thioesterase. | 0.851 |
EDM82005.1 | guaA | LMED105_10885 | LMED105_14213 | COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). | Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP. | 0.675 |
EDM82676.1 | EDM82002.1 | LMED105_11430 | LMED105_10870 | Ham1-like protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | Hypothetical protein. | 0.426 |
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