STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM82705.1COG3216 Uncharacterized protein conserved in bacteria. (198 aa)    
Predicted Functional Partners:
EDM82704.1
Hydrolase, TatD family protein; COG0084 Mg-dependent DNase.
       0.572
EDM82703.1
DNA internalization-related competence protein ComEC/Rec2; COG0658 Predicted membrane metal-binding protein.
       0.523
EDM85139.1
Hypothetical protein.
  
     0.504
EDM83282.1
Hypothetical protein.
  
     0.438
EDM82381.1
Flagellar export FliJ; COG2882 Flagellar biosynthesis chaperone.
  
     0.433
EDM83490.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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