STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM83589.1Putative lipase transmembrane protein; COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold. (336 aa)    
Predicted Functional Partners:
EDM83590.1
Glucose-methanol-choline oxidoreductase; COG2303 Choline dehydrogenase and related flavoproteins.
    
  0.815
EDM83592.1
COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
    
  0.758
EDM83591.1
Hypothetical protein.
       0.749
EDM83577.1
Putative secreted lipase; COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold.
  
     0.718
EDM83594.1
Hypothetical protein.
       0.538
EDM84445.1
Acyltransferase; COG0840 Methyl-accepting chemotaxis protein.
  
  
  0.475
EDM82783.1
Acyltransferase; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
  0.466
EDM83595.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.452
EDM83588.1
Short chain dehydrogenase; COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes.
  
  
 0.436
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
    
   0.407
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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