STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM83644.1COG2908 Uncharacterized protein conserved in bacteria. (305 aa)    
Predicted Functional Partners:
EDM83643.1
Glycosyl transferase, group 1; COG0438 Glycosyltransferase.
     0.993
lpxB
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
    
 0.705
lpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
     
 0.686
EDM83642.1
Short-chain dehydrogenase/reductase SDR; COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH).
       0.565
thrS
threonyl-tRNA synthetase.
       0.504
EDM83639.1
Putative AttH; COG5621 Predicted secreted hydrolase.
       0.471
EDM83640.1
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
       0.471
EDM83641.1
ABC transporter related protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
       0.471
EDM83638.1
ABC transporter related protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
       0.437
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.