STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM84014.1Hypothetical protein. (87 aa)    
Predicted Functional Partners:
EDM84013.1
4Fe-4S ferredoxin, iron-sulfur binding protein; COG0437 Fe-S-cluster-containing hydrogenase components 1.
       0.773
EDM84015.1
COG2864 Cytochrome b subunit of formate dehydrogenase.
       0.741
EDM84012.1
Twin-arginine translocation pathway signal; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.689
EDM84011.1
Hypothetical protein.
       0.568
EDM84009.1
Putative iron-sulfur binding protein; COG1145 Ferredoxin.
       0.543
EDM84010.1
COG3381 Uncharacterized component of anaerobic dehydrogenases.
       0.543
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.