STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM84102.1Sulfatase; COG2194 Predicted membrane-associated, metal-dependent hydrolase. (541 aa)    
Predicted Functional Partners:
EDM84101.1
Membrane protein; COG3907 PAP2 (acid phosphatase) superfamily protein.
 
   
 0.786
EDM83144.1
COG3119 Arylsulfatase A and related enzymes.
    
  0.644
EDM84103.1
Hypothetical protein.
       0.578
EDM82634.1
Hypothetical protein; COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.
  
 
 0.508
EDM82806.1
Glycosyl transferase, family 39; COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.
  
 
 0.508
EDM85050.1
otnG protein.
    
 0.507
EDM84104.1
Hypothetical protein.
       0.502
EDM82273.1
COG1560 Lauroyl/myristoyl acyltransferase.
  
  
 0.491
EDM82653.1
COG4786 Flagellar basal body rod protein.
    
 
 0.478
EDM84105.1
Heavy metal efflux pump CzcA; COG3696 Putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.473
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.