STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM84108.1COG1538 Outer membrane protein. (387 aa)    
Predicted Functional Partners:
EDM84106.1
COG0845 Membrane-fusion protein.
 
  0.966
EDM84105.1
Heavy metal efflux pump CzcA; COG3696 Putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
  0.936
EDM84107.1
Hypothetical protein.
  
  0.861
EDM84627.1
COG0845 Membrane-fusion protein.
 
  0.857
EDM84626.1
Heavy metal efflux pump CzcA; COG3696 Putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
  0.750
EDM84104.1
Hypothetical protein.
       0.715
EDM84227.1
COG0845 Membrane-fusion protein.
  
 0.633
EDM84001.1
Type I secretion membrane fusion protein, HlyD; COG0845 Membrane-fusion protein.
  
 0.633
EDM84103.1
Hypothetical protein.
       0.610
EDM84619.1
Secretion protein HlyD; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.586
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.