STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM82502.1COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (431 aa)    
Predicted Functional Partners:
EDM85166.1
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 0.999
EDM83796.1
Two domain protein: 3-hydroxyacyl-CoA dehydrogenase; COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.999
EDM82503.1
MaoC domain protein; COG0583 Transcriptional regulator.
 
 0.895
EDM82504.1
COG1960 Acyl-CoA dehydrogenases.
  
  0.831
EDM82826.1
COG0281 Malic enzyme.
    
 0.814
EDM84446.1
COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  0.801
EDM82185.1
Putative enoyl CoA-hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.
   
  0.769
EDM84920.1
COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
  0.769
EDM81994.1
COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
  0.769
EDM83798.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
   
  0.769
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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