STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM82468.1COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components. (256 aa)    
Predicted Functional Partners:
EDM82467.1
COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 0.999
EDM83848.1
Probable substrate-binding periplasmic (pbp) abc transporter protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
 0.995
EDM82199.1
Periplasmic binding protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
 0.990
EDM83890.1
Hypothetical protein; Belongs to the Cob(I)alamin adenosyltransferase family.
  
 
  0.695
EDM82628.1
Adenosylcobinamide-phosphate synthase; COG1270 Cobalamin biosynthesis protein CobD/CbiB.
    
 0.694
EDM85101.1
ABC transporter related protein; COG1137 ABC-type (unclassified) transport system, ATPase component.
  
  
 
0.688
EDM82465.1
Acriflavine resistance protein B; COG0841 Cation/multidrug efflux pump.
       0.598
EDM82466.1
Possible Transcriptional Regulator, TetR family protein; COG1309 Transcriptional regulator.
       0.598
EDM82464.1
Multidrug resistance protein; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.540
EDM83847.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
  
 0.530
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.