STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM82486.1Putative iron binding protein component of ABC iron transporter; COG1840 ABC-type Fe3+ transport system, periplasmic component. (344 aa)    
Predicted Functional Partners:
EDM84222.1
Binding-protein-dependent transport systems inner membrane component; COG1178 ABC-type Fe3+ transport system, permease component.
 
 
 0.949
EDM83204.1
Binding-protein-dependent transport systems inner membrane component; COG1178 ABC-type Fe3+ transport system, permease component.
 
 
 0.949
EDM84223.1
ABC transporter related protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
 
 0.900
EDM82906.1
COG3487 Uncharacterized iron-regulated protein.
  
    0.740
EDM84659.1
COG0477 Permeases of the major facilitator superfamily.
  
  
 0.632
EDM82689.1
PAS; COG0642 Signal transduction histidine kinase.
    
 0.618
EDM82880.1
ABC transporter related protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
 
 
 0.603
EDM82345.1
COG0492 Thioredoxin reductase.
   
    0.531
EDM82485.1
COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
     
 0.514
EDM82886.1
Biopolymer transport protein, ExbD/TolR family; COG0848 Biopolymer transport protein.
  
    0.501
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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