STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM82287.1COG2371 Urease accessory protein UreE. (200 aa)    
Predicted Functional Partners:
EDM82286.1
COG1666 Uncharacterized protein conserved in bacteria; Belongs to the UPF0234 family.
       0.709
EDM82288.1
Peptidase M, neutral zinc metallopeptidase, zinc-binding site; COG0308 Aminopeptidase N.
       0.701
fbp
Inositol phosphatase/fructose-1,6-bisphosphatase; COG0158 Fructose-1,6-bisphosphatase; Belongs to the FBPase class 1 family.
       0.611
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
       0.517
EDM83762.1
COG0067 Glutamate synthase domain 1.
     
 0.500
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.