STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM82774.1Hypothetical protein; COG1451 Predicted metal-dependent hydrolase. (251 aa)    
Predicted Functional Partners:
EDM82773.1
COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.
 
    0.933
EDM82775.1
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
       0.787
EDM82772.1
COG0241 Histidinol phosphatase and related phosphatases.
   
   0.676
glyQ
COG0752 Glycyl-tRNA synthetase, alpha subunit.
  
    0.575
glyS
COG0751 Glycyl-tRNA synthetase, beta subunit.
       0.573
EDM82776.1
Dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.432
EDM82777.1
DNA-binding protein Fis; COG2901 Factor for inversion stimulation Fis, transcriptional activator; Belongs to the transcriptional regulatory Fis family.
       0.432
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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