STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM82825.1Putative patatin; COG1752 Predicted esterase of the alpha-beta hydrolase superfamily. (406 aa)    
Predicted Functional Partners:
EDM82826.1
COG0281 Malic enzyme.
       0.646
EDM82823.1
Hypothetical protein; COG1055 Na+/H+ antiporter NhaD and related arsenite permeases.
 
     0.581
EDM83717.1
Hypothetical protein; COG1066 Predicted ATP-dependent serine protease.
  
     0.543
EDM82824.1
COG0147 Anthranilate/para-aminobenzoate synthases component I.
       0.528
EDM83590.1
Glucose-methanol-choline oxidoreductase; COG2303 Choline dehydrogenase and related flavoproteins.
  
  
  0.491
EDM83716.1
Hypothetical protein; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair.
  
     0.463
EDM82821.1
Glycosyl transferase, family 2; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
    0.460
EDM82822.1
Divalent cation transporter; Acts as a magnesium transporter.
       0.456
EDM82820.1
Hypothetical protein.
       0.421
EDM82827.1
Hypothetical protein; COG0436 Aspartate/tyrosine/aromatic aminotransferase.
       0.418
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.