STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl3650S ribosomal protein L36, chloroplastic. (37 aa)    
Predicted Functional Partners:
rpl20
50S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.989
rpl16-2
Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
  
 
 0.988
LOC106764118
50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
 
 0.987
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
  
 
 0.984
rps14-2
Ribosomal protein S14.
  
 
 0.983
rps2
30S ribosomal protein S2, chloroplastic.
  
 
 0.981
rpl14
50S ribosomal protein L14, chloroplastic; Binds to 23S rRNA.
  
 
 0.979
LOC106774979
50S ribosomal protein L6, chloroplastic; Belongs to the universal ribosomal protein uL6 family.
  
 
 0.979
LOC106759626
50S ribosomal protein L5, chloroplastic.
  
 
 0.977
rps7
30S ribosomal protein S7, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit.
  
 
 0.976
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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