STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106753413Squamosa promoter-binding-like protein 6. (480 aa)    
Predicted Functional Partners:
LOC106779861
Uncharacterized protein LOC106779861.
      
 0.930
LOC106780619
Transcription factor TCP4.
      
 0.898
LOC106778614
Transcription factor TCP4.
  
   
 0.787
LOC106753320
Protein NBR1 homolog isoform X1.
    
 0.728
LOC106759516
E3 ubiquitin-protein ligase PRT1 isoform X1.
    
 0.723
LOC106777218
Calmodulin-like protein 1.
      
 0.708
LOC106779425
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
   
 0.625
LOC106767275
Calmodulin-like protein 1.
      
 0.582
LOC106776141
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
   
 0.578
LOC106754577
Ankyrin-3.
    
 0.544
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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