STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106753505Glutamate-rich WD repeat-containing protein 1. (474 aa)    
Predicted Functional Partners:
LOC106776192
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 
 0.855
LOC106754515
Peter Pan-like protein.
  
    0.812
LOC106762612
Periodic tryptophan protein 2.
   
  
 0.801
LOC106775494
WD repeat-containing protein 36.
   
 
 0.796
LOC106775155
U3 snoRNP-associated protein-like EMB2271.
  
  
 0.790
LOC106753328
Transducin beta-like protein 3 isoform X1.
  
  
0.780
LOC106770845
Ribosome production factor 2 homolog.
   
  
 0.779
LOC106770824
DEAD-box ATP-dependent RNA helicase 16.
   
 
 0.768
LOC106775175
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
  
 0.764
LOC106769224
Ribosomal RNA processing protein 1 homolog isoform X1.
   
   0.751
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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