STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106754605WD repeat-containing protein 55. (351 aa)    
Predicted Functional Partners:
LOC106764356
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
  
 
 0.911
LOC106758045
Protein ROOT INITIATION DEFECTIVE 3.
  
 
 0.657
LOC106769913
Probable U3 small nucleolar RNA-associated protein 7.
   
  
 0.630
LOC106769477
WD repeat-containing protein 43.
  
  
 0.630
LOC106753265
Guanine nucleotide-binding protein subunit beta-like protein.
  
 
  0.624
LOC106766316
Protein ROOT INITIATION DEFECTIVE 3-like.
  
 
  0.624
LOC106775155
U3 snoRNP-associated protein-like EMB2271.
  
  
 0.619
LOC106779594
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
    0.610
LOC106760063
Tetratricopeptide repeat protein 27-like.
   
    0.596
LOC106779384
Tetratricopeptide repeat protein 27 homolog isoform X1.
   
    0.596
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.