STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106754818MACPF domain-containing protein At1g14780. (609 aa)    
Predicted Functional Partners:
LOC106772492
RGG repeats nuclear RNA binding protein A-like.
  
     0.498
LOC106775504
psbQ-like protein 3, chloroplastic.
  
     0.494
LOC106770533
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
     0.482
LOC106777336
Uncharacterized protein LOC106777336.
  
     0.466
LOC106762569
U-box domain-containing protein 44.
  
     0.462
LOC106777365
Uncharacterized protein LOC106777365.
  
     0.461
LOC111241283
Trigger factor-like protein TIG, Chloroplastic.
  
     0.460
LOC106756749
Methyltransferase.
  
     0.450
LOC106770655
Methyltransferase.
  
     0.447
LOC111240804
Protein SPIRAL1-like 3.
  
     0.446
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.