STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106755177Homogentisate phytyltransferase 1, chloroplastic-like. (385 aa)    
Predicted Functional Partners:
LOC106764806
Geranylgeranyl diphosphate reductase, chloroplastic-like.
  
 
 0.881
LOC106768993
Geranylgeranyl diphosphate reductase, chloroplastic.
  
 
 0.863
LOC106762339
Tocopherol cyclase, chloroplastic.
 
  
 0.822
LOC106765342
4-hydroxyphenylpyruvate dioxygenase isoform X1.
     
 0.819
LOC106772119
2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic; Belongs to the class I-like SAM-binding methyltransferase superfamily. MPBQ/MBSQ MT family.
    
 0.781
LOC106772053
2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic; Belongs to the class I-like SAM-binding methyltransferase superfamily. MPBQ/MBSQ MT family.
    
 0.750
LOC106762491
Probable solanesyl-diphosphate synthase 3, chloroplastic; Belongs to the FPP/GGPP synthase family.
  
 
 0.714
LOC106772791
Homogentisate solanesyltransferase, chloroplastic.
  
  
0.691
LOC106770232
Glycinol 4-dimethylallyltransferase-like.
  
  
 
0.673
LOC106770239
Glycinol 4-dimethylallyltransferase-like isoform X1.
  
  
 
0.670
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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