STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106755317Cell division control protein 48 homolog B isoform X1; Belongs to the AAA ATPase family. (613 aa)    
Predicted Functional Partners:
LOC106756704
NPL4-like protein 1.
   
 0.896
LOC106763975
Ubiquitin thioesterase OTU1.
   
 0.878
LOC106759949
Protein OS-9 homolog.
    
 0.872
LOC106753469
Ataxin-3 homolog.
    
 0.858
LOC106771032
Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.
   
 0.815
LOC106776150
peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase isoform X1.
    
 0.808
LOC106754647
Plant UBX domain-containing protein 7-like.
    
 0.802
LOC106768966
UBX domain-containing protein.
    
 0.802
LOC106763005
Plant UBX domain-containing protein 4.
   
 0.785
LOC106775772
Plant UBX domain-containing protein 4.
   
 0.785
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.