STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106755665E3 ubiquitin-protein ligase RMA3 isoform X1. (250 aa)    
Predicted Functional Partners:
LOC106767661
erlin-2-B isoform X1.
   
 0.567
LOC106759949
Protein OS-9 homolog.
     
 0.550
LOC106765343
delta(7)-sterol-C5(6)-desaturase; Belongs to the sterol desaturase family.
      
 0.545
LOC106757164
ubiquitin-60S ribosomal protein L40.
     
 0.460
LOC106775784
ubiquitin-60S ribosomal protein L40.
     
 0.460
LOC106759820
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
 0.451
LOC106765711
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
 0.451
LOC106774421
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
 0.451
LOC106774165
ERAD-associated E3 ubiquitin-protein ligase component HRD3A.
     
 0.429
LOC106776434
F-box protein At1g70590.
     
 0.429
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.