STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106756601Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (387 aa)    
Predicted Functional Partners:
LOC106753960
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
 
 0.992
LOC106754828
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
 
 0.991
LOC106764977
Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic.
  
 0.986
LOC106762613
Uncharacterized protein LOC106762613 isoform X1; Belongs to the precorrin methyltransferase family.
    
 0.980
LOC106762702
Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
     
 0.955
LOC106778141
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 
0.926
LOC106778066
Porphobilinogen deaminase, chloroplastic.
 
 0.916
LOC106755984
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
  
 0.867
LOC106769019
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
  
 0.849
LOC106752752
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
  
 0.848
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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