STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106756804Protein HESO1 isoform X1. (592 aa)    
Predicted Functional Partners:
LOC106764958
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
    
 
 0.615
LOC106761198
DNA cross-link repair protein SNM1.
   
 0.587
LOC106752789
Small RNA 2'-O-methyltransferase.
      
 0.515
LOC106764031
Small RNA degrading nuclease 5.
     
 0.496
LOC106768892
Chloroplast processing peptidase-like.
      
 0.489
LOC106759383
Uncharacterized protein LOC106759383.
      
 0.439
LOC106761910
Eukaryotic initiation factor 4A-3.
    
 0.438
LOC106777150
ATP-dependent RNA helicase eIF4A.
    
 0.438
LOC106760113
Endoribonuclease Dicer homolog 1; Belongs to the helicase family. Dicer subfamily.
    
 
 0.435
LOC106765620
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
 
 0.431
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.