STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106756842Zinc finger protein JACKDAW isoform X1. (499 aa)    
Predicted Functional Partners:
LOC106761182
High mobility group B protein 9.
    
 0.447
LOC106762790
High mobility group B protein 10 isoform X1.
    
 0.447
LOC106769713
High mobility group B protein 15.
    
 0.447
LOC106770743
High mobility group B protein 15-like.
    
 0.447
LOC111242295
High mobility group B protein 10-like isoform X1.
    
 0.447
LOC106767512
Chromatin structure-remodeling complex protein SYD.
    
 0.444
LOC106779707
Serine/threonine-protein kinase ATG1t isoform X1; Belongs to the protein kinase superfamily.
   
 
 0.439
LOC111242324
Calmodulin-binding protein 60 G-like.
  
  
  0.414
rps2
30S ribosomal protein S2, chloroplastic.
   
  0.413
LOC106770868
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.
    
 0.413
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.