STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106757101Protein CUP-SHAPED COTYLEDON 3. (281 aa)    
Predicted Functional Partners:
LOC106776193
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
    
 0.932
LOC106776266
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
    
 0.932
LOC106764059
Replication protein A 32 kDa subunit A isoform X1.
   
 0.826
LOC106767348
Replication protein A 32 kDa subunit A.
   
 0.826
LOC106762553
DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1.
    
 0.804
LOC106771906
Serine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family.
    
 0.801
LOC106775089
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.769
LOC106776143
Tudor domain-containing protein 3.
    
 0.716
LOC106765446
DNA helicase; Belongs to the MCM family.
   
 0.711
LOC106773866
DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family.
   
   0.674
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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