STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106757463Pectinesterase; In the C-terminal section; belongs to the pectinesterase family. (563 aa)    
Predicted Functional Partners:
LOC106771804
Pectate lyase.
  
 
  0.728
LOC106771218
Pectate lyase.
  
 
 0.719
LOC106765724
Pectate lyase.
  
 
  0.716
LOC106769806
Pectate lyase.
  
 
 0.715
LOC106766066
Pectate lyase.
  
 
  0.712
LOC106775459
Pectate lyase.
  
 
  0.712
LOC106766854
Pectate lyase.
  
 
  0.710
LOC106766039
Polygalacturonase.
     
 0.672
LOC106757468
Polygalacturonase.
     
 0.656
LOC106761717
Probable polygalacturonase At3g15720.
     
 0.656
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.