STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106757555DEAD-box ATP-dependent RNA helicase 57. (541 aa)    
Predicted Functional Partners:
LOC106769509
Something about silencing protein 10 isoform X1.
   
 0.969
LOC106777976
Nucleolar protein 6 isoform X1.
   
 0.952
LOC106772300
rRNA biogenesis protein RRP5.
   
 0.937
LOC106779594
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.933
LOC106779448
ATP-dependent RNA helicase DEAH13.
   
 
 0.887
LOC106772442
Nucleolar protein 14.
   
 
 0.880
LOC106769913
Probable U3 small nucleolar RNA-associated protein 7.
   
 
 0.858
LOC106762757
DEAD-box ATP-dependent RNA helicase 36; Belongs to the DEAD box helicase family.
  
0.852
LOC106765128
U3 small nucleolar RNA-associated protein 4 homolog.
   
 0.841
LOC106774227
DEAD-box ATP-dependent RNA helicase 13.
  
0.820
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.