STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106757530Beta-carotene isomerase D27, chloroplastic. (252 aa)    
Predicted Functional Partners:
LOC106759033
Carotenoid cleavage dioxygenase 7, chloroplastic.
     
 0.946
LOC106752577
Lycopene beta cyclase, chloroplastic.
     
 0.923
LOC106763718
Beta-carotene hydroxylase 2, chloroplastic; Belongs to the sterol desaturase family.
     
 0.911
LOC106770994
Beta-carotene hydroxylase 2, chloroplastic; Belongs to the sterol desaturase family.
     
 0.911
LOC106758055
Protein LUTEIN DEFICIENT 5, chloroplastic; Belongs to the cytochrome P450 family.
     
 0.907
LOC106770415
Beta-carotene isomerase D27, chloroplastic.
  
  
 
0.901
LOC106776980
Urea-proton symporter DUR3; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
      
 0.894
LOC106777126
lysM domain receptor-like kinase 4.
      
 0.717
LOC106754071
Nicotianamine synthase.
      
 0.703
LOC106756794
Nicotianamine synthase.
      
 0.580
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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