STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106757884Calcium homeostasis endoplasmic reticulum protein. (702 aa)    
Predicted Functional Partners:
LOC106774457
Splicing factor SF3a60 homolog.
   
 0.981
LOC106775980
Splicing factor 3B subunit 2.
   
 0.976
LOC106759711
Splicing factor 3A subunit 2.
   
 0.975
LOC106775636
Splicing factor 3B subunit 1.
   
 0.970
LOC106777202
DEAD-box ATP-dependent RNA helicase 42.
   
 0.969
LOC106774489
PHD finger-like domain-containing protein 5B.
   
 0.961
LOC106765182
Small nuclear ribonucleoprotein-associated protein.
   
 0.945
LOC106761855
pre-mRNA-processing-splicing factor 8A.
   
 
 0.926
LOC106757811
pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1.
   
 0.925
LOC106757267
Small nuclear ribonucleoprotein G.
   
 0.924
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.