STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106758432TPR repeat-containing protein ZIP4. (926 aa)    
Predicted Functional Partners:
LOC106756066
Meiosis-specific protein ASY1.
   
 
 0.578
LOC106777308
DNA mismatch repair protein MSH4.
   
  
 0.576
LOC106758335
DExH-box ATP-dependent RNA helicase DExH17.
   
 
 0.568
LOC106763228
DNA mismatch repair protein MSH5.
   
  
 0.551
LOC106762581
Crossover junction endonuclease MUS81 isoform X1.
      
 0.545
LOC106762345
DNA mismatch repair protein MLH1 isoform X1.
    
 
 0.545
LOC106777687
DNA mismatch repair protein MLH3 isoform X1.
    
 
 0.544
LOC106757569
DExH-box ATP-dependent RNA helicase DExH14 isoform X1.
   
 
 0.541
LOC106755916
E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1.
      
 0.518
LOC106770998
DNA repair protein RAD51 homolog 3.
   
  
 0.503
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.