STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106759052Alpha carbonic anhydrase 7. (266 aa)    
Predicted Functional Partners:
LOC106770952
Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
     
  0.900
LOC106770845
Ribosome production factor 2 homolog.
   
 
 0.640
LOC106759111
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
   
  
 0.587
LOC106759586
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
   
  
 0.587
LOC106778245
Dehydrogenase/reductase SDR family member 12.
    
 
 0.579
LOC106756287
Autophagy-related protein 3.
      
 0.545
LOC106754515
Peter Pan-like protein.
   
    0.471
LOC106762612
Periodic tryptophan protein 2.
   
    0.468
LOC106769085
Pumilio homolog 24.
   
    0.468
LOC106760726
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.465
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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