STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106759627Splicing factor U2af small subunit B. (316 aa)    
Predicted Functional Partners:
LOC106754421
60S ribosomal protein L4.
      
 0.820
LOC106759415
Eukaryotic translation initiation factor 5.
      
 0.820
LOC106759462
RGG repeats nuclear RNA binding protein A.
      
 0.820
LOC106772210
RGG repeats nuclear RNA binding protein A.
      
 0.820
LOC106774213
RGG repeats nuclear RNA binding protein A.
      
 0.820
LOC106775211
40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
      
 0.820
LOC106773997
Serine/arginine-rich splicing factor SC35.
   
 0.773
LOC106762283
Splicing factor U2af large subunit A isoform X1.
   
 0.739
LOC106757655
Serine/arginine-rich-splicing factor SR34 isoform X2.
   
 0.735
LOC106760769
PLASMODESMATA CALLOSE-BINDING PROTEIN 3.
   
 0.728
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.