STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106759884Serine/arginine-rich splicing factor RS41-like isoform X1. (274 aa)    
Predicted Functional Partners:
LOC106773997
Serine/arginine-rich splicing factor SC35.
   
 0.874
LOC106754215
Nuclear cap-binding protein subunit 2.
    
 0.864
LOC106765620
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
 0.815
LOC106775913
30-kDa cleavage and polyadenylation specificity factor 30.
    
 0.815
LOC106767982
Zinc finger CCCH domain-containing protein 45 isoform X1.
    
 0.815
LOC106757267
Small nuclear ribonucleoprotein G.
   
 0.800
LOC106775850
Cleavage stimulation factor subunit 50 isoform X1.
    
 0.798
LOC106759444
2,3-bisphosphoglycerate-independent phosphoglycerate mutase.
   
 0.787
LOC106770907
Cleavage stimulation factor subunit 77 isoform X1.
   
 0.787
LOC106769779
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 0.759
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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